Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
INTS13

Cell type

Cell type Class
Neural
Cell type
Neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
NPC
cell line
NPC
cell type
neuronal progenitor cell differentated from pluripotent stem cells
genotype
INTS10HET2
treatment
No treatment
chip antibody
INTS13 (bethyl A303-575A)
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM7246611
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei (Covaris S220), and protein-DNA complexes were isolated with antibody-conjugated Dynabeads NEBNext Ultra II DNA Library Prep Kit for Illumina (New England Biolabs Inc.)

Sequencing Platform

instrument_model
NextSeq 2000

hg38

Number of total reads
49967300
Reads aligned (%)
88.6
Duplicates removed (%)
35.4
Number of peaks
6938 (qval < 1E-05)

hg19

Number of total reads
49967300
Reads aligned (%)
87.9
Duplicates removed (%)
35.7
Number of peaks
6761 (qval < 1E-05)

Base call quality data from DBCLS SRA